R: How to install tiff package on OS X El Capitan -
i trying install r tiff package on mac os x el capitan homebrew installation of r. used post r: how install package tiff on mac os x mavericks? follow suggestions.
r-version:
> version _ platform x86_64-apple-darwin15.0.0 arch x86_64 os darwin15.0.0 system x86_64, darwin15.0.0 status major 3 minor 2.2 year 2015 month 08 day 14 svn rev 69053 language r version.string r version 3.2.2 (2015-08-14) nickname fire safety > install.packages("tiff", type="source") installing package '/usr/local/lib/r/3.2/site-library' (as 'lib' unspecified) % total % received % xferd average speed time time time current dload upload total spent left speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0100 28925 100 28925 0 0 168k 0 --:--:-- --:--:-- --:--:-- 168k * installing *source* package ‘tiff’ ... ** package ‘tiff’ unpacked , md5 sums checked ** libs clang -i/usr/local/cellar/r/3.2.2_1/r.framework/resources/include -dndebug -i/usr/local/opt/gettext/include -i/usr/local/opt/readline/include -i/usr/local/opt/openssl/include -fpic -i/usr/local/opt/libtiff/include -c common.c -o common.o common.c:121:16: warning: comparison of unsigned expression < 0 false [-wtautological-compare] if (offset < 0 || offset > rj->len) { ~~~~~~ ^ ~ 1 warning generated. clang -i/usr/local/cellar/r/3.2.2_1/r.framework/resources/include -dndebug -i/usr/local/opt/gettext/include -i/usr/local/opt/readline/include -i/usr/local/opt/openssl/include -fpic -i/usr/local/opt/libtiff/include -c read.c -o read.o clang -i/usr/local/cellar/r/3.2.2_1/r.framework/resources/include -dndebug -i/usr/local/opt/gettext/include -i/usr/local/opt/readline/include -i/usr/local/opt/openssl/include -fpic -i/usr/local/opt/libtiff/include -c write.c -o write.o clang -dynamiclib -wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -l/usr/local/cellar/r/3.2.2_1/r.framework/resources/lib -l/usr/local/opt/gettext/lib -l/usr/local/opt/readline/lib -l/usr/local/opt/openssl/lib -o tiff.so common.o read.o write.o -l/usr/local/opt/gettext/lib -f/usr/local/cellar/r/3.2.2_1/r.framework/.. -framework r -lintl -wl,-framework -wl,corefoundation installing /usr/local/lib/r/3.2/site-library/tiff/libs ** r ** inst ** preparing package lazy loading ** *** installing indices ** building package indices ** testing if installed package can loaded error in dyn.load(file, dllpath = dllpath, ...) : unable load shared object '/usr/local/lib/r/3.2/site-library/tiff/libs/tiff.so': dlopen(/usr/local/lib/r/3.2/site-library/tiff/libs/tiff.so, 6): symbol not found: _tiffclientopen referenced from: /usr/local/lib/r/3.2/site-library/tiff/libs/tiff.so expected in: flat namespace in /usr/local/lib/r/3.2/site-library/tiff/libs/tiff.so error: loading failed execution halted error: loading failed * removing ‘/usr/local/lib/r/3.2/site-library/tiff’ warning in install.packages : installation of package 'tiff' had non-zero exit status downloaded source packages in '/private/var/folders/g8/rqv40nhs3zqcntnz_9t9l60w0000gr/t/rtmpjyhafp/downloaded_packages'
initially, getting error 'tiff.h' file not found. so, modified ~/.r/makevars include lines:
cflags=-i/usr/local/opt/libtiff/include #ldflags=-l/usr/local/opt/libtiff/lib -llibtiff -llibtiffxx ldflags=-l/usr/local/opt/libtiff/lib -llibtiff.5 -llibtiffxx.5
the install able find tiff.h can't find right libs after tried different ldflags -l specs based on files located in /usr/local/opt/libtiff/lib directory.
brew install libtiff: warning: libtiff-4.0.6 installed
edit:
> devtools::session_info() session info ------------------------------------------------------------- setting value version r version 3.2.2 (2015-08-14) system x86_64, darwin15.0.0 ui rstudio (0.99.489) language (en) collate c tz america/new_york date 2016-01-07 packages ----------------------------------------------------------------- package * version date source biocinstaller * 1.20.1 2016-01-07 bioconductor dbi * 0.3.1 2014-09-24 cran (r 3.2.2) mass 7.3-45 2015-11-10 cran (r 3.2.2) matrix * 1.2-3 2015-11-28 cran (r 3.2.2) matrixmodels 0.4-1 2015-08-22 cran (r 3.2.2) r6 2.1.1 2015-08-19 cran (r 3.2.2) rcolorbrewer 1.1-2 2014-12-07 cran (r 3.2.2) rsqlite * 1.0.0 2014-10-25 cran (r 3.2.2) rcpp 0.12.2 2015-11-15 cran (r 3.2.2) sparsem 1.7 2015-08-15 cran (r 3.2.2) assertthat 0.1 2013-12-06 cran (r 3.2.2) car 2.1-1 2015-12-14 cran (r 3.2.2) caret * 6.0-62 2015-11-23 cran (r 3.2.2) chron 2.3-47 2015-06-24 cran (r 3.2.2) codetools 0.2-14 2015-07-15 cran (r 3.2.2) colorspace 1.2-6 2015-03-11 cran (r 3.2.2) devtools 1.9.1 2015-09-11 cran (r 3.2.2) digest 0.6.8 2014-12-31 cran (r 3.2.2) doby * 4.5-14 2015-12-29 cran (r 3.2.2) domc * 1.3.4 2015-10-13 cran (r 3.2.2) dplyr * 0.4.3 2015-09-01 cran (r 3.2.2) foreach * 1.4.3 2015-10-13 cran (r 3.2.2) formatr 1.2.1 2015-09-18 cran (r 3.2.2) gdata * 2.17.0 2015-07-04 cran (r 3.2.2) ggplot2 * 2.0.0 2015-12-18 cran (r 3.2.2) glmnet * 2.0-2 2015-04-12 cran (r 3.2.2) gsubfn * 0.6-6 2014-08-27 cran (r 3.2.2) gtable 0.1.2 2012-12-05 cran (r 3.2.2) gtools 3.5.0 2015-05-29 cran (r 3.2.2) htmltools 0.3 2015-12-29 cran (r 3.2.2) iterators * 1.0.8 2015-10-13 cran (r 3.2.2) knitr 1.11 2015-08-14 cran (r 3.2.2) labeling 0.3 2014-08-23 cran (r 3.2.2) lattice * 0.20-33 2015-07-14 cran (r 3.2.2) lazyeval * 0.1.10 2015-01-02 cran (r 3.2.2) lme4 1.1-10 2015-10-06 cran (r 3.2.2) lpsolve 5.6.13 2015-09-19 cran (r 3.2.2) magrittr 1.5 2014-11-22 cran (r 3.2.2) memoise 0.2.1 2014-04-22 cran (r 3.2.2) mgcv 1.8-10 2015-12-12 cran (r 3.2.2) minqa 1.2.4 2014-10-09 cran (r 3.2.2) munsell 0.4.2 2013-07-11 cran (r 3.2.2) nlme 3.1-122 2015-08-19 cran (r 3.2.2) nloptr 1.0.4 2014-08-04 cran (r 3.2.2) nnet * 7.3-11 2015-08-30 cran (r 3.2.2) pbkrtest 0.4-4 2015-12-12 cran (r 3.2.2) plyr * 1.8.3 2015-06-12 cran (r 3.2.2) proto * 0.3-10 2012-12-22 cran (r 3.2.2) quantreg 5.19 2015-08-31 cran (r 3.2.2) reshape2 * 1.4.1 2014-12-06 cran (r 3.2.2) rmarkdown 0.9.2 2016-01-01 cran (r 3.2.2) rpart * 4.1-10 2015-06-29 cran (r 3.2.2) rpart.plot * 1.5.3 2015-10-01 cran (r 3.2.2) sampling * 2.7 2015-07-01 cran (r 3.2.2) scales 0.3.0 2015-08-25 cran (r 3.2.2) sqldf * 0.4-10 2014-11-07 cran (r 3.2.2) stringi 1.0-1 2015-10-22 cran (r 3.2.2) stringr * 1.0.0 2015-04-30 cran (r 3.2.2) survival * 2.38-3 2015-07-02 cran (r 3.2.2) tidyr * 0.3.1 2015-09-10 cran (r 3.2.2) yaml 2.1.13 2014-06-12 cran (r 3.2.2)
anything else can try ?
thanks in advance
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